FPGA Acceleration of Short Read Alignment


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This work proposes a novel dataflow architecture for Smith-Waterman Matrix-fill and Traceback stages, which are at the heart of short- read alignment on NGS data. The FPGA accelerator is coupled with radical software restructuring to widely-used Bowtie2 aligner to deliver end-to-end speedup while preserving accuracy.

Speaker: Konstantina Koliogeorgi

Kategorien: Veranstaltungen, Forschung

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